EMBASSY package includes applications with the same look and feel as EMBOSS applications, but which the author wishes to be kept separate from EMBOSS. This is usually because the packages are for specialised sequence analysis or for non-sequence based analysis, or are licensed differently to EMBOSS (i.e. non GPL). EMBASSY includes the following applications: - DOMAINATRIX - DOMALIGN - DOMSEARCH - PHYLIP - HMMER - EMNU - ESIM4 - MEME - SIGNATURE - STRUCTURE - TOPO - MSE - VIENNA This requires EMBOSS.